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DE FARIA SILVA, LETÍCIA; LEICHTWEIS, BRUNO GRESPAN; SILVA, ANA CAROLINA ANDRADE; ROCHA, RODRIGO BARROS; TEIXEIRA, ALEXSANDRO LARA; CAIXETA, EVELINE TEIXEIRA. Fingerprinting Amazonian coffees: assessing diversity through molecular markers. EUPHYTICA, v. 220, p. 28, 2024. https://doi.org/10.1007/s10681-023-03274-2

DE SOUSA, ITHALO COELHO; BARRETO, CYNTHIA APARECIDA VALIATI; CAIXETA, EVELINE TEIXEIRA; NASCIMENTO, ANA CAROLINA CAMPANA; AZEVEDO, CAMILA FERREIRA; ALKIMIM, EMILLY RUAS; NASCIMENTO, MOYSÉS. The trade-off between density marker panels size and predictive ability of genomic prediction for agronomic traits in Coffea canephora. EUPHYTICA, v. 220, p. 46, 2024. https://doi.org/10.1007/s10681-024-03303-8

ERON, FRANCISCO; NOMAN, MUHAMMAD; DE OLIVEIRA, RAPHAEL RICON; CHALFUN-JUNIOR, ANTONIO. Computer Vision-Aided Intelligent Monitoring of Coffee: Towards Sustainable Coffee Production. SCIENTIA HORTICULTURAE, v. 327, p. 112847, 2024. https://doi.org/10.1016/j.scienta.2024.112847 

DE OLIVEIRA, KELLEN KAUANNE PIMENTA; DE OLIVEIRA, RAPHAEL RICON; DE CAMPOS RUME, GABRIEL; RIBEIRO, THALES HENRIQUE CHERUBINO; FERNANDES’BRUM, CHRISTIANE NORONHA; DO AMARAL, LAURENCE RODRIGUES; KAKRANA, ATUL; MATHIONI, SANDRA; MEYERS, BLAKE C.; DE SOUZA GOMES, MATHEUS; CHALFUN’JUNIOR, ANTONIO. Microsporogenesis and the biosynthesis of floral small interfering RNAs in coffee have a unique pattern among eudicots, suggesting a sensitivity to climate changes. Plant Direct, v. 8, p. e561, 2024. https://doi.org/10.1002/pld3.561

BORÉM, FLÁVIO MEIRA; RABELO, MARIANE HELENA SANCES; DE CARVALHO ALVES, ANA PAULA; SANTOS, CLÁUDIA MENDES; PIERONI, RODRIGO SOARES; NAKAJIMA, MAKOTO; SUGINO, RYOSUKE. Fermentation of coffee fruit with sequential inoculation of Lactiplantibacillus plantarum and Saccharomyces cerevisiae: effect on sensory attributes and chemical composition of the beans. FOOD CHEMISTRY, v. 446, p. 138820, 2024. https://doi.org/10.1016/j.foodchem.2024.138820 

HELENA SANCES RABELO, MARIANE; MEIRA BORÉM, FLÁVIO; PAULA DE CARVALHO ALVES, ANA; SOARES PIERONI, RODRIGO; MENDES SANTOS, CLAUDIA; NAKAJIMA, MAKOTO; SUGINO, RYOSUKE. Fermentation of coffee fruit with sequential inoculation of Lactiplantibacillus plantarum and Saccharomyces cerevisiae: Effects on volatile composition and sensory characteristics. FOOD CHEMISTRY, v. 444, p. 138608, 2024. https://doi.org/10.1016/j.foodchem.2024.138608

DE FÁTIMA PEREIRA SILVA, P., DE RESENDE, M. L. V., REICHEL, T., DE LIMA SANTOS, M., DOS SANTOS BOTELHO, D. M., FERREIRA, E. B., & FREITAS, N. C. (2023). Molecular Biotechnology, v. 65, n. 11, p. 1777-1795, 2023. https://doi.org/10.1007/s12033-023

TOBAR, L. M. S.; CAIXETA, E. T.; BARKA, G. D.; BOREM, A.; ZAMBOLIM, L.; NASCIMENTO, M.; CRUZ, C.D.; OLIVEIRA, A.C.B. de; PEREIRA, A.A. Marker-Assisted Recurrent Selection for Pyramiding Leaf Rust and Coffee Berry Disease Resistance Alleles in Coffea arabica L. Genes, v. 14, p. 189, 2023. https://doi.org/10.3390/genes14010189 

SUELA, MATHEUS MASSARIOL; AZEVEDO, CAMILA FERREIRA; NASCIMENTO, ANA CAROLINA CAMPANA; MOMEN, MEHDI; DE OLIVEIRA, ANTÔNIO CARLOS BAIÃO; CAIXETA, EVELINE TEIXEIRA; MOROTA, GOTA; NASCIMENTO, MOYSÉS. Genome-wide association study for morphological, physiological, and productive traits in Coffea arabica using structural equation models. Tree Genetics & Genomes, v. 19, p. 23, 2023. https://doi.org/10.1007/s11295-023-01597-8 

SILVA, EDSON MARIO DE ANDRADE; SAMILA LIMA CASTRO, ISABEL; PEREIRA AGUILAR, ANANDA; TEIXEIRA CAIXETA, EVELINE; ANTÔNIO DE OLIVEIRA MENDES, TIAGO. New genetic markers for 100% arabica coffee demonstrate high discriminatory potential for InDel-HRM-based coffee authentication. FOOD RESEARCH INTERNATIONAL, v. 173, p. 113424, 2023. https://doi.org/10.1016/j.foodres.2023.113424 

RESENDE, M.D.V.; ALVES, R. S.; OLIVEIRA, A.C.B. de; CAIXETA, E. T.; PEREIRA, A.A.; MARIZ, B. L. Otimização da experimentação no melhoramento do cafeeiro. Documentos/Embrapa Café, v. 18, p. 1-69, 2023.

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RUME, GABRIEL DE CAMPOS; DE OLIVEIRA, RAPHAEL RICON; RIBEIRO, THALES HENRIQUE CHERUBINO; CHALFUN-JÚNIOR, ANTONIO. Genome-wide and expression analyses of MADS-box genes in the tetraploid Coffea arabica L. and its diploid parental subgenomes. PLANT GENE, v. 34, p. 100413, 2023. https://doi.org/10.1016/j.plgene.2023.10041 

FERRAZ, GABRIELA ESTER; LÓPEZ, MARLON ENRIQUE; GONÇALVES, FLÁVIA MARIA AVELAR; MALTA, MARCELO RIBEIRO; LIMA, RENATO RIBEIRO DE; CARVALHO, GLADYSTON RODRIGUES DE; MEINHARDT, LYNDEL W.; ZHANG, DAPENG; CHALFUN-JUNIOR, ANTONIO. Progeny selections of coffee cultivar ‘Mundo Novo’ with potential for the specialty coffee market. Beverage Plant Research, v. 3, p. 1-11, 2023. https://doi.org/10.48130/BPR-2023-0001 

CHERUBINO RIBEIRO, THALES HENRIQUE; DE OLIVEIRA, RAPHAEL RICON; DAS NEVES, TAÍS TEIXEIRA; SANTIAGO, WILDER DOUGLAS; MANSUR, BETHANIA LEITE; SACZK, ADELIR APARECIDA; VILELA DE RESENDE, MARIO LUCIO; CHALFUN-JUNIOR, ANTONIO. Metabolic Pathway Reconstruction Indicates the Presence of Important Medicinal Compounds in Coffea Such as L-DOPA. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v. 24, p. 12466, 2023. https://doi.org/10.3390/ijms241512466. 

DE OLIVEIRA, KELLEN KAUANNE PIMENTA; DE OLIVEIRA, RAPHAEL RICON; CHALFUN-JUNIOR, ANTONIO. Small RNAs: Promising Molecules to Tackle Climate Change Impacts in Coffee Production. PLANTS, v. 12, p. 3531, 2023. https://doi.org/10.3390/plants12203531 

BORÉM, FLÁVIO MEIRA; ABREU, GISELLE FIGUEIREDO DE; FERREIRA, ANTONIO GILBERTO; SANTOS, MAIARA DA SILVA; ALVES, THAYANA DA CONCEIÇÃO; ALVES, ANA PAULA DE CARVALHO. 1H NMR spectroscopy applied to identify chemical aging markers in green coffee (Coffea arabica L.). FOOD CHEMISTRY, v. 405, p. 134667, 2023. https://doi.org/10.1016/j.foodchem.2022.134667 

ROCHA, HULLY ALVES; BORÉM, FLÁVIO MEIRA; ALVES, ANA PAULA DE CARVALHO; SANTOS, CLÁUDIA MENDES DOS; SCHWAN, ROSANE FREITAS; HAEBERLIN, LUANA; NAKAJIMA, MAKOTO; SUGINO, RYOSUKE. Natural fermentation with delayed inoculation of the yeast Torulaspora delbrueckii: Impact on the chemical composition and sensory profile of natural coffee. FOOD RESEARCH INTERNATIONAL, v. 174, p. 113632, 2023. https://doi.org/10.1016/j.foodres.2023.113632 

BORÉM, FLÁVIO MEIRA; MATIAS, GABRIEL CARVALHO; ALVES, ANA PAULADE CARVALHO; HAEBERLIN, LUANA; SANTOS, CLÁUDIA MENDES DOS; ROSA, STTELA DELLYZETE VEIGA FRANCO DA. Effect of storage conditions on the chemical and sensory quality of pulped natural coffee. JOURNAL OF STORED PRODUCTS RESEARCH, v. 104, p. 102183, 2023. https://doi.org/10.1016/j.jspr.2023.102183 

AMARAL SALVIO, LUÍS GUSTAVO; ÂNGELO CIRILLO, MARCELO; MEIRA BORÉM, FLÁVIO; DE CARVALHO ALVES, ANA PAULA; MARIA CAMPOS PALUMBO, JULIANA; MENDES DOS SANTOS, CLÁUDIA; HAEBERLIN, LUANA; FREITAS SCHWAN, ROSANE; NAKAJIMA, MAKOTO; SUGINO, RYOSUKE. Fermented natural coffee followed by pulping: Analysis of the initial sensory quality and after six months of storage. COFFEE SCIENCE, v. 18, p. 1-13, 2023. https://doi.org/10.25186/.v18i.2120 

MATIAS, GABRIEL CARVALHO; ALVES, ANA PAULA DE CARVALHO; BOREM, FLÁVIO MEIRA; HAEBERLIN, LUANA; SANTOS, CLAUDIA MENDES DOS; ROSA, STTELA DELLYZETE VEIGA FRANCO DA. Effect of storage conditions on the physical properties of coffee beans with different qualities. EUREKA: Life Sciences, v. 1, p. 35-49, 2023. https://doi.org/10.21303/2504-5695.2023.003008 

CARVALHO, HUMBERTO FANELLI; FERRÃO, LUÍS FELIPE VENTORIM; GALLI, GIOVANNI; NONATO, JULIANA VIEIRA ALMEIDA; PADILHA, LILIAN; MALUF, MIRIAN PEREZ; RIBEIRO DE RESENDE, MÁRCIO FERNANDO; FRITSCHE-NETO, ROBERTO; GUERREIRO-FILHO, OLIVEIRO. On the accuracy of threshold genomic prediction models for leaf miner and leaf rust resistance in arabica coffee. Tree Genetics & Genomes, v. 19, p. 11, 2023.http://dx.doi.org/10.1007/s11295-022-01581-8

TOBAR, L. M. S.; CAIXETA, Eveline Teixeira.; BARKA, G. D.; BOREM, A.; ZAMBOLIM, L.; NASCIMENTO, M.; CRUZ, C. D.; OLIVEIRA, ANTONIO CARLOS BAIÃO DE; PEREIRA, A.A. Marker-Assisted Recurrent Selection for Pyramiding Leaf Rust and Coffee Berry Disease Resistance Alleles in Coffea arabica L. Genes, v. 14, p. 1-18, 2023.http://dx.doi.org/10.3390/genes14010189

RESENDE, M. D. V.; ALVES, R. S.; OLIVEIRA, ANTONIO CARLOS BAIÃO DE; CAIXETA, E. T.; PEREIRA, A. A.; MARIZ, B. L. Otimização da experimentação no melhoramento do cafeeiro. Documentos – Embrapa Café, v. 18, p. 1-69, 2023.https://ainfo.cnptia.embrapa.br/digital/bitstream/item/261576/1/Embrapa-Cafe-Documentos-18-VF.pdf

SUELA, M. M.; AZEVEDO, C. F.; NASCIMENTO, A. C. C.; MOMEN, M.; OLIVEIRA, ANTONIO CARLOS BAIÃO DE; CAIXETA, EVELINE TEIXEIRA; MOROTA, G.; NASCIMENTO, M. Genome-wide association study for morphological, physiological, and productive traits in Coffea arabica using structural equation models. Tree Genetics & Genomes, v. 19, p. 1-17, 2023.

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Santos, M. D. L., Resende, M. L. V. D., Alves, G. S. C., Huguet-Tapia, J. C., Resende, M. F. R. D. J., & Brawner, J. T. Genome-wide identification, characterization, and comparative analysis of NLR resistance genes in Coffea spp. Frontiers in Plant Science, v. 13, p. 868581, 2022. https://doi.org/10.3389/fpls.2022.868581

SANTOS, M. D. L., DE RESENDE, M. L. V., DOS SANTOS CISCON, B. A., FREITAS, N. C., PEREIRA, M. H. D. B., REICHEL, T., & MATHIONI, S. M. LysM receptors in Coffea arabica: Identification, characterization, and gene expression in response to Hemileia vastatrix. Plos one, v. 17, n. 2, p. e0258838, 2022. https://doi.org/10.1371/journal.pone.0258838

REICHEL, T., DE RESENDE, M. L. V., MONTEIRO, A. C. A., FREITAS, N. C., DOS SANTOS BOTELHO, D. M. (2022). Constitutive defense strategy of coffee under field conditions: A comparative assessment of resistant and susceptible cultivars to rust. Molecular Biotechnology, v. 64, n. 3, p. 263-277, 2022. https://doi.org/10.1007/s12033-021-00405-9

REICHEL, T., DE RESENDE, M. L. V., NADALETI, D. H. S., SANTOS, F. D. O., & BOTELHO, C. E. (2023).  Potential Of Rust-Resistant Arabica Coffee Cultivars For Specialty Coffee Production. Bioscience Journal, v. 39, 2023. https://doi.org/10.14393/BJ-v39n0a2023-66103

CASTRO, I.S.L.; FREITAS-LOPES, R. L.; FERREIRA, S. S.; MACIEL, T.E.F.; FLOREZ, J.C.; MACIEL-ZAMBOLIM, E.; ZAMBOLIM, L.; CAIXETA, E. T. Transcriptome Analysis Uncovers the Gene Expression Profile of Hemileia vastatrix (Race XXXIII) during the Interactions with Resistant and Susceptible Coffee. Agronomy-Basel, v. 12, p. 444, 2022. https://doi.org/10.3390/agronomy12020444 

COELHO DE SOUSA, ITHALO; NASCIMENTO, MOYSÉS; DE CASTRO SANTANNA, ISABELA; TEIXEIRA CAIXETA, EVELINE; FERREIRA AZEVEDO, CAMILA; DAMIÃO CRUZ, COSME; LOPES DA SILVA, FELIPE; RUAS ALKIMIM, EMILLY; CAMPANA NASCIMENTO, ANA CAROLINA; VERGARA LOPES SERÃO, NICK. Marker effects and heritability estimates using additive-dominance genomic architectures via artificial neural networks in Coffea canephora. PLoS One, v. 17, p. e0262055, 2022. https://doi.org/10.1371/journal.pone.0262055 

DE FARIA SILVA, LETÍCIA; ALKIMIM, EMILLY RUAS; BARREIRO, PEDRO RICARDO ROSSI MARQUES; LEICHTWEIS, BRUNO GRESPAN; SILVA, ANA CAROLINA ANDRADE; DA SILVA, RUANE ALICE; SOUSA, TIAGO VIEIRA; NASCIMENTO, MOYSÉS; CAIXETA, Eveline Teixeira. Genome-wide association study of plant architecture and diseases resistance in Coffea canephora. EUPHYTICA, v. 218, p. 92, 2022. https://doi.org/10.1007/s10681-022-03042-8 

CAIXETA, E. T.; RESENDE, M.D.V.; ALKIMIM, E.R.; SOUSA, T.V.; OLIVEIRA, A.C.B. de; PEREIRA, A.A.; ALVES, R. S. Aceleração do melhoramento do cafeeiro via seleção genômica: agilidade e eficácia no lançamento de novas cultivares. Documentos – Embrapa Café, v. 17, p. 1-55, 2022.

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RESENDE, M.D.V.; OLIVEIRA, A.C.B. de; CAIXETA, E. T.; ALKIMIM, E.R.; SOUSA, T.V.; PEREIRA, A.A.; ALVES, R. S.; FERREIRA, C. A. Tamanho amostral e detecção de genes via GWAS em características quantitativas do cafeeiro. Circular Técnica, v. 7, p. 1-23,2022.https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1142431/1/Circular-Tecnica-n7-Embrapa-cafe.pdf 

LIMA CASTRO, ISABEL SAMILA; ROSSI MARQUES BARREIROS, PEDRO RICARDO; DE OLIVEIRA MENDES, TIAGO ANTÔNIO; FLOREZ, JUAN CARLOS; ANDRADE SILVA, EDSON MARIO DE; NEVES PORTO, BRENDA; ZAMBOLIM, LAÉRCIO; CAIXETA, Eveline Teixeira. Gene Expression and Interactome Analysis of Candidate Effectors Associated with Pre- and Post-Haustorial Hemileia vastatrix-Coffee Interaction. Journal of Biotechnology and Biomedicine, v. 05, p. 198-213, 2022. https://www.fortunejournals.com/articles/gene-expression-and-interactome-analysis-of-candidate-effectors-associated-with-pre.pdf

CASARIN, TATIANE; FREITAS, NATÁLIA CHAGAS; PINTO, RENAN TERASSI; BREITLER, JEAN’CHRISTOPHE; RODRIGUES, LEONARDO AUGUSTO ZEBRAL; MARRACCINI, PIERRE; ETIENNE, HERVÉ; DINIZ, LEANDRO EUGENIO CARDAMONE; ANDRADE, ALAN CARVALHO; PAIVA, LUCIANO VILELA. Multiplex CRISPR/Cas9-mediated knockout of the phytoene desaturase gene in Coffea canephora. Scientific Reports, v. 12, p. xx, 2022. https://doi.org/10.1038/s41598-022-21566-w 

CARVALHO, M. H.; ROSA, S. D. V. F.; COELHO, S. V. B.; GUIMARAES, C. C.; MARTINS, R. S.; CLEMENTE, A. C. S.; PAIVA, L. V. Drying of arabica coffee and its effect on the gene expression and activity of enzymes linked to seed physiological quality. ACTA SCIENTIARUM-AGRONOMY, v. 45, p. xx-xx, 2022. https://doi.org/10.4025/actasciagron.v45i1.56908 

LÓPEZ, MARLON ENRIQUE; SILVA SANTOS, IASMINY; MARQUEZ GUTIÉRREZ, ROBERT; JARAMILLO MESA, ANDREA; CARDON, CARLOS HENRIQUE; ESPÍNDOLA LIMA, JULIANA MARIA; ALMEIDA LIMA, ANDRÉ; CHALFUN-JUNIOR, ANTONIO. Crosstalk Between Ethylene and Abscisic Acid During Changes in Soil Water Content Reveals a New Role for 1-Aminocyclopropane-1- Carboxylate in Coffee Anthesis Regulation. Frontiers in Plant Science, v. 13, p. 824948, 2022. https://doi.org/10.3389/fpls.2022.824948 

DE SOUSA, GUSTAVO F.; SILVA, MAILA ADRIELY; DE MORAIS, EVERTON G.; VAN OPBERGEN, GUSTAVO AVELAR Z.; VAN OPBERGEN, GUILHERME GERRIT A. Z.; DE OLIVEIRA, RAPHAEL R.; AMARAL, DOUGLAS; BROWN, PATRICK; CHALFUN-JUNIOR, ANTONIO; GUILHERME, LUIZ ROBERTO GUIMARÃES. Selenium enhances chilling stress tolerance in coffee species by modulating nutrient, carbohydrates, and amino acids content. Frontiers in Plant Science, v. 13, p. 1, 2022. https://doi.org/10.3389/fpls.2022.1000430 

SANTOS, IASMINY SILVA; RIBEIRO, THALES HENRIQUE CHERUBINO; DE OLIVEIRA, KELLEN KAUANNE PIMENTA; DOS SANTOS, JACQUELINE OLIVEIRA; MOREIRA, RAFAEL OLIVEIRA; LIMA, RENATO RIBEIRO; LIMA, ANDRÉ ALMEIDA; CHALFUN-JUNIOR, ANTONIO. Multigenic regulation in the ethylene biosynthesis pathway during coffee flowering. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS, v. 28, p. 1657-1669, 2022. https://doi.org/10.1007/s12298-022-01235-y 

ALVES ROCHA, HULLY; LUIZ GOMES CORREA, JEFFERSON; MEIRA BORÉM, FLÁVIO. Vacuum drying of peeled coffee cherry beans: Drying kinetics and physiological effects. COFFEE SCIENCE, v. 16, p. 1-7, 2022. https://doi.org/10.25186/.v16i.1921 

LOPES, ANA CLAUDIA ALENCAR; ANDRADE, RAFAELA PEREIRA; DOS REIS CASAGRANDE, MARCELO; SANTIAGO, WILDER DOUGLAS; DE RESENDE, MARIO LÚCIO VILELA; DAS GRAÇAS CARDOSO, MARIA; VILANOVA, MAR; DUARTE, WHASLEY FERREIRA. Production and characterization of a new distilled beverage from green coffee seed residue. FOOD CHEMISTRY, v. 377, p. 131960, 2022. https://doi.org/10.1016/j.foodchem.2021.131960

SALGADO, SÔNIA MARIA DE LIMA; FATOBENE, BÁRBHARA JOANA DOS REIS; PEREIRA, ANTONIO ALVES; ABRAHÃO, JULIANA COSTA DE REZENDE; BOTELHO, CESAR ELIAS; CARVALHO, GLADYSTON RODRIGUES; OLIVEIRA, ANTÔNIO CARLOS BAIÃO DE; FERREIRA, ANDRÉ DOMINGHETTI; FIGUEIREDO, VANESSA CASTRO; VILELA, DIEGO JUNIOR MARTINS; LUZ, SILVANA RAMLOW OTTO TEIXEIRA DA; ANDRADE, VINICIUS TEIXEIRA. MGS Guaiçara and MGS Vereda: Coffea arabica cultivars resistant to the root-knot nematode Meloidogyne paranaensis. Crop Breeding and Applied Biotechnology, v. 22, p. e42132236, 2022. http://dx.doi.org/10.1590/1984-70332022v22n3c29

CAIXETA, EVELINE TEIXEIRA.; RESENDE, MARCOS DEON VILELA DE; ALKIMIM, E. R.; SOUSA, T. V.; OLIVEIRA, ANTONIO CARLOS BAIÃO DE; PEREIRA, ANTONIO ALVES; ALVES, R. S. Aceleração do melhoramento do cafeeiro via seleção genômica: agilidade e eficácia no lançamento de novas cultivares. Documentos – Embrapa Café, v. 17, p. 1-54, 2022.

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RESENDE, MARCOS DEON VILELA DE; OLIVEIRA, ANTONIO CARLOS BAIÃO DE; CAIXETA, EVELINE TEIXEIRA.; ALKIMIM, E. R.; SOUSA, T. V.; PEREIRA, A. A.; ALVES, R. S.; AZEVEDO, C. F. Tamanho amostral e detecção de genes via GWAS em características quantitativas do cafeeiro. Circular Técnica, v. 7, p. 1-23, 2022.https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1142431/1/Circular-Tecnica-n7-Embrapa-cafe.pdf

SILVA, VÂNIA APARECIDA; ABRAHÃO, JULIANA COSTA DE REZENDE; REIS, ANDRÉ MORAES; SANTOS, MELINE DE OLIVEIRA; PEREIRA, ANTÔNIO ALVES; BOTELHO, CESAR ELIAS; CARVALHO, GLADYSTON RODRIGUES; CASTRO, EVARISTO MAURO DE; BARBOSA, JOÃO PAULO RODRIGUES ALVES DELFINO; BOTEGA, GUSTAVO PUCCI; OLIVEIRA, ANTÔNIO CARLOS BAIÃO DE. Strategy for Selection of Drought-Tolerant Arabica Coffee Genotypes in Brazil. Agronomy, v. 12, p. 2167, 2022. http://dx.doi.org/10.3390/agronomy12092167

ELIAS BOTELHO, CESAR; COSTA DE REZENDE, JULIANA; ALVES PEREIRA, ANTONIO; CARLOS BAIÃO DE OLIVEIRA, ANTÔNIO; RODRIGUES CARVALHO, GLADYSTON; DOMINGHETTI FERREIRA, ANDRÉ. MGS Aranãs: the new Arabica coffee cultivar developed by Epamig with wide adaptation. Coffee Science, v. 16, p. 1-4, 2022.http://dx.doi.org/10.25186/.v16i.1942

ARIYOSHI, CAROLINE; SANTANA, GUSTAVO CÉSAR; FELICIO, MARIANE SILVA; SERA, GUSTAVO HIROSHI; NOGUEIRA, LIVIA MARIA; RODRIGUES, LUCAS MATEUS RIVERO; FERREIRA, RAFAELLE VECCHIA; DA SILVA, BRUNA SILVESTRE RODRIGUES; RESENDE, MÁRIO LÚCIO VILELA DE; DESTÉFANO, SUZETE APARECIDA LANZA; DOMINGUES, DOUGLAS SILVA; PEREIRA, LUIZ FILIPE PROTASIO. Genome-wide association study for resistance to Pseudomonas syringae pv. garcae in Coffea arabica. Frontiers in Plant Science, v. 13, p. 1, 2022. https://doi.org/10.3389/fpls.2022.989847 

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LÓPEZ, MARLON ENRIQUE; SANTOS, I. S.; OLIVEIRA, R. R. DE; LIMA, ANDRÉ A.; CARDON, CARLOS H.; CHALFUN-JUNIOR, A. An overview of the endogenous and environmental factors related to the Coffea arabica flowering process. Beverage Plant Research, v. 1, p. 1, 2021. https://doi.org/10.48130/bpr-2021-0013 

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ABREU, GISELLE FIGUEIREDO; BORÉM, FLÁVIO MEIRA; OLIVEIRA, LUIZ FERNANDO CAPPA; ALMEIDA, MARIANA RAMOS; ALVES, ANA PAULA CARVALHO. Raman spectroscopy: A new strategy for monitoring the quality of green coffee beans during storage. FOOD CHEMISTRY, v. 287, p. 241-248, 2019. https://doi.org/10.1016/j.foodchem.2019.02.019 

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BARBOSA, J. N.; BORÉM, F. M.; ALVES, H. M. R.; CIRILLO, M, A.; MAGUAS, C. Isotopic signature of the relation between environment and the quality of spatial coffee. AFRICAN JOURNAL OF AGRICULTURAL RESEARCH, v. 14, p. 354-360, 2019. https://doi.org/10.5897/AJAR2018.13633

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ALKIMIM, EMILLY RUAS; CAIXETA, Eveline Teixeira; SOUSA, TIAGO VIEIRA; DA SILVA, FELIPE LOPES; SAKIYAMA, NEY SUSSUMU; ZAMBOLIM, LAÉRCIO. High-throughput targeted genotyping using next-generation sequencing applied in Coffea canephora breeding. EUPHYTICA, v. 214, p. 50, 2018. https://doi.org/10.1007/s10681-018-2126-2 

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ALVES, GABRIEL SERGIO COSTA; TORRES, LUANA FERREIRA; DE AQUINO, SINARA OLIVEIRA; REICHEL, THARYN; FREIRE, LUCIANA PERREIRA; VIEIRA, NATALIA GOMES; VINECKY, FELIPE; THIS, DOMINIQUE; POT, DAVID; ETIENNE, HERVÉ; Paiva, Luciano Vilela; MARRACCINI, PIERRE; ANDRADE, ALAN CARVALHO. Nucleotide Diversity of the Coding and Promoter Regions of DREB1D, a Candidate Gene for Drought Tolerance in Coffea Species. Tropical Plant Biology, v. 10, p. 1-18, 2018. https://doi.org/10.1007/s12042-018-9199-x 

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FIGUEIREDO, LUISA PEREIRA; BORÉM, FLÁVIO MEIRA; RIBEIRO, FABIANA CARMANINI; GIOMO, GERSON SILVA; MALTA, MARCELO RIBEIRO; TAVEIRA, JOSÉ HENRIQUE DA SILVA. Sensory analysis and chemical composition of `bourbon’ coffees cultivated in different environments. COFFEE SCIENCE, v. 13, p. 122, 2018. https://coffeescience.ufla.br/index.php/Coffeescience/article/view/1400

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BORÉM, FLÁVIO MEIRA; ISQUIERDO, EDER PEDROZA; ALVES, GUILHERME EURIPEDES; RIBEIRO, DIEGO EGÍDIO; SIQUEIRA, VALDINEY CAMBUY; TAVEIRA, JOSÉ HENRIQUE DA SILVA. Quality of Natural Coffee Dried Under Different Temperatures and Drying Rates. Coffee Science, v. 13, p. 159-172, 2018. https://coffeescience.ufla.br/index.php/Coffeescience/article/view/1410 

SANTANA, GUSTAVO C.; PEREIRA, LUIZ F. P.; POT, DAVID; IVAMOTO, SUZANA T.; DOMINGUES, DOUGLAS S.; FERREIRA, RAFAELLE V.; PAGIATTO, NATALIA F.; DA SILVA, BRUNA S. R.; NOGUEIRA, LÍVIA M.; KITZBERGER, CINTIA S. G.; SCHOLZ, MARIA B. S.; DE OLIVEIRA, FERNANDA F.; SERA, GUSTAVO H.; PADILHA, LILIAN; LABOUISSE, JEAN-PIERRE; GUYOT, ROMAIN; CHARMETANT, PIERRE; LEROY, THIERRY. Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L. Scientific Reports, v. 8, p. 1-12, 2018. http://dx.doi.org/10.1038/s41598-017-18800-1 

SILVA, G.N.; NASCIMENTO, M.; SANTANNA, I. C.; CRUZ, C.D.; CAIXETA, EVELINE T.; CARNEIRO, P.C.S.; SILVA ROSADO, R D.S.; PESTANA, K.N.; ALMEIDA, D.P.; OLIVEIRA, M. S. Artificial neural networks compared with Bayesian generalized linear regression for leaf rust resistance prediction in Arabica coffee. Pesquisa Agropecuária Brasileira, v. 52, p. 186-193, 2017. https://doi.org/10.1590/S0100-204X2017000300009 

ALKIMIM, E.R.; CAIXETA, EVELINE T.; SOUSA, T.V.; PEREIRA, A.A.; OLIVEIRA, A.C.B. de; ZAMBOLIM, L.; SAKIYAMA, N.S. Marker-assisted selection provides arabica coffee with genes from other Coffea species targeting on multiple resistance to rust and coffee berry disease. Molecular Breeding, v. 37, p. 6, 2017. https://doi.org/10.1007/s11032-016-0609-1 

BARKA, G. D.; CAIXETA, EVELINE T.; ALMEIDA, R.F. de; ALVARENGA, S.M.; ZAMBOLIM, L. Differential expression of molecular rust resistance components have distinctive profiles in Coffea arabica – Hemileia vastatrix interactions. European Journal of Plant Pathology, p. 31, 2017. https://doi.org/10.1007/s10658-017-1202-0 

SOUSA, T.V.; CAIXETAB, E. T.; ALKIMIM, E.R.; OLIVEIRA, A.C.B. de; PEREIRA, A.A.; ZAMBOLIM, L.; SAKIYAMA, N.S. Molecular markers useful to discriminate Coffea arabica cultivars with high genetic similarity. Euphytica (Wageningen), v. 213, p. 75, 2017. https://doi.org/10.1007/s10681-017-1865-9 

SOUSA, TIAGO VIEIRA; CAIXETA, EVELINE TEIXEIRA; ALKIMIM, EMILLY RUAS; DE OLIVEIRA, ANTONIO CARLOS BAIÃO; PEREIRA, ANTONIO ALVES; SAKIYAMA, NEY SUSSUMU; DE RESENDE JÚNIOR, MARCIO FERNANDO RIBEIRO; ZAMBOLIM, LAÉRCIO. Population structure and genetic diversity of coffee progenies derived from Catuaí and Híbrido de Timor revealed by genome-wide SNP marker. Tree Genetics & Genomes, v. 13, p. 124, 2017. https://doi.org/10.1007/s11295-017-1208-y 

FLOREZ, JUAN CARLOS; MOFATTO, LUCIANA SOUTO; DO LIVRAMENTO FREITAS-LOPES, REJANE; FERREIRA, SÁVIO SIQUEIRA; ZAMBOLIM, EUNIZE MACIEL; CARAZZOLLE, MARCELO FALSARELLA; ZAMBOLIM, LAÉRCIO; CAIXETA, EVELINE TEIXEIRA. High throughput transcriptome analysis of coffee reveals prehaustorial resistance in response to Hemileia vastatrix infection. PLANT MOLECULAR BIOLOGY, v. 95, p. 607-623, 2017. https://doi.org/10.1007/s11103-017-0676-7 

FREITAS, NATÁLIA CHAGAS; BARRETO, HORLLYS GOMES; FERNANDES-BRUM, CHRISTIANE NORONHA; MOREIRA, RAFAEL OLIVEIRA; CHALFUN-JUNIOR, ANTONIO; PAIVA, LUCIANO VILELA. Validation of reference genes for qPCR analysis of Coffea arabica L. somatic embryogenesis-related tissues. PLANT CELL TISSUE AND ORGAN CULTURE, v. 128, p. 663-678, 2017. https://doi.org/10.1007/s11240-016-1147-6 

LIVRAMENTO, KALYNKA; BORÉM, FLÁVIO; TORRES, LUANA; SILVA, FABRÍCIO; LIVRAMENTO, DÁRLAN; PAIVA, LUCIANO. Proteomic Analysis of Natural and Demucilaged Coffee Beans from Plantations at Different Altitudes in the Mantiqueira Mountains. Journal of Experimental Agriculture International, v. 19, p. 1-15, 2017. https://doi.org/10.9734/JEAI/2017/38343 

NORONHA FERNANDES-BRUM, CHRISTIANE; MARINHO REZENDE, PÂMELA; CHERUBINO RIBEIRO, THALES HENRIQUE; RICON DE OLIVEIRA, RAPHAEL; CUNHA DE SOUSA CARDOSO, THAÍS; RODRIGUES DO AMARAL, LAURENCE; DE SOUZA GOMES, MATHEUS; CHALFUN-JUNIOR, ANTONIO. A genome-wide analysis of the RNA-guided silencing pathway in coffee reveals insights into its regulatory mechanisms. PLoS One, v. 12, p. e0176333, 2017. https://doi.org/10.1371/journal.pone.0176333 

FERNANDES-BRUM, CHRISTIANE NORONHA; GARCIA, BRUNO DE OLIVEIRA; MOREIRA, RAFAEL OLIVEIRA; SÁGIO, SOLANGE APARECIDA; BARRETO, HORLLYS GOMES; LIMA, ANDRÉ ALMEIDA; FREITAS, NATÁLIA CHAGAS; DE LIMA, RENATO RIBEIRO; DE CARVALHO, CARLOS HENRIQUE SIQUEIRA; CHALFUN-JÚNIOR, ANTONIO. A panel of the most suitable reference genes for RT-qPCR expression studies of coffee: screening their stability under different conditions. Tree Genetics & Genomes, v. 13, p. 131, 2017. https://doi.org/10.1007/s11295-017-1213-1 

SIQUEIRA, VALDINEY CAMBUY; BORÉM, FLÁVIO MEIRA; ALVES, GUILHERME EURIPEDES; ISQUIERDO, EDER PEDROZA; PINTO, AFONSO CELSO FERREIRA; RIBEIRO, DIEGO EGIDIO; RIBEIRO, FABIANA CARMANINI. Drying kinetics of processed natural coffee with high moisture content. COFFEE SCIENCE, v. 12, p. 400, 2017. https://coffeescience.ufla.br/index.php/Coffeescience/article/view/1320 

SOUSA, TIAGO VIEIRA; CAIXETA, EVELINE TEIXEIRA; ALKIMIM, EMILLY RUAS; DE OLIVEIRA, ANTONIO CARLOS BAIÃO; PEREIRA, ANTONIO ALVES; SAKIYAMA, NEY SUSSUMU; DE RESENDE JÚNIOR, MARCIO FERNANDO RIBEIRO; ZAMBOLIM, LAÉRCIO. Population structure and genetic diversity of coffee progenies derived from Catuaí and Híbrido de Timor revealed by genome-wide SNP marker. Tree Genetics & Genomes, v. 13, p. 124, 2017.http://dx.doi.org/10.1007/s11295-017-1208-y

CARVALHO, G. R.; BARTHOLO, G. F.; PEREIRA, A. A.; REZENDE, J. C. DE; BOTELHO, C. E.; OLIVEIRA, ANTONIO CARLOS BAIÃO DE; SILVA, F. L. MG Travessia: a Coffee arabica cultivar productive and responsive to pruning. Crop Breeding and Applied Biotechnology, v. 17, p. 281-285, 2017. https://doi.org/10.1590/1984-70332017v17n3c43

SOUSA, TIAGO VIEIRA; CAIXETA, Eveline Teixeira; ALKIMIM, EMILLY RUAS; DE OLIVEIRA, ANTONIO CARLOS BAIÃO; PEREIRA, ANTONIO ALVES; ZAMBOLIM, Laércio; SAKIYAMA, NEY SUSSUMU. Molecular markers useful to discriminate Coffea arabica cultivars with high genetic similarity. Euphytica, v. 213, p. 75, 2017. http://dx.doi.org/10.1007/s10681-017-1865-9

ALKIMIM, EMILLY RUAS; CAIXETA, EVELINE TEIXEIRA; SOUSA, TIAGO VIEIRA; PEREIRA, ANTÔNIO ALVES; DE OLIVEIRA, ANTONIO CARLOS BAIÃO; ZAMBOLIM, LAÉRCIO; SAKIYAMA, NEY SUSSUMU. Marker-assisted selection provides arabica coffee with genes from other Coffea species targeting on multiple resistance to rust and coffee berry disease. Molecular Breeding, v. 37, p. 6, 2017.http://dx.doi.org/10.1007/s11032-016-0609-1

VAMOTO, SUZANA T.; SAKURAY, LEONARDO M.; FERREIRA, LUCIA P.; KITZBERGER, CÍNTIA S.G.; SCHOLZ, MARIA B.S.; POT, DAVID; LEROY, THIERRY; VIEIRA, LUIZ G.E.; DOMINGUES, DOUGLAS S.; PEREIRA, LUIZ F.P. Diterpenes biochemical profile and transcriptional analysis of cytochrome P450s genes in leaves, roots, flowers, and during Coffea arabica L. fruit development. Plant Physiology and Biochemistry, v. 111, p. 340-347, 2017. http://dx.doi.org/10.1016/j.plaphy.2016.12.004 

IVAMOTO, SUZANA TIEMI; REIS, OSVALDO; DOMINGUES, DOUGLAS SILVA; DOS SANTOS, TIAGO BENEDITO; DE OLIVEIRA, FERNANDA FREITAS; POT, DAVID; LEROY, THIERRY; VIEIRA, LUIZ GONZAGA ESTEVES; CARAZZOLLE, MARCELO FALSARELLA; PEREIRA, GONÇALO AMARANTE GUIMARÃES; PEREIRA, LUIZ FILIPE PROTASIO. Transcriptome analysis of leaves, flowers and fruits perisperm of Coffea arabica l. reveals the differential expression of genes involved in raffinose biosynthesis. Plos One, v. 12, p. e0169595, 2017.  http://dx.doi.org/10.1371/journal.pone.0169595 

ZAMBOLIM, LAÉRCIO; DE SOUZA NETO, PEDRO NERY; ZAMBOLIM, EUNIZE MACIEL; CAIXETA, Eveline Teixeira; SAKIYAMA, NEY SUSSUMO; FERRÃO, ROMÁRIO GAVA. Components of resistance of conilon coffee that reduce the rate of leaf rust development. AUSTRALASIAN PLANT PATHOLOGY, v. 45, p. 389-400, 2016. https://doi.org/10.1007/s13313-016-0425-4 

GABRIELLA DO LIVRAMENTO, KALYNKA; MEIRA BORÉM, FLÁVIO; CLEITON JOSÉ, ANDERSON; VALADARES SANTOS, AGENOR; EINSTEIN DO LIVRAMENTO, DARLAN; DONIZETI ALVES, JOSÉ; VILELA PAIVA, LUCIANO. Proteomic analysis of coffee grains exposed to different drying process. Food Chemistry, v. xx, p. xx, 2016. https://doi.org/10.1016/j.foodchem.2016.10.069 

BARBOSA, BÁRBARA CASTANHEIRA FERRARA; SILVA, SAMUEL CHAVES; DE OLIVEIRA, RAPHAEL RICON; CHALFUN, ANTONIO. Zinc supply impacts on the relative expression of a metallothionein-like gene in Coffea arabica plants. Plant and Soil (Print), v. 12, p. 1-13, 2016. https://doi.org/10.1007/s11104-016-2983-1 

BORÉM, F. M.; LUISA, PEREIRA FIGUEIREDO; FABIANA, CARMANINI RIBEIRO; TAVEIRA, J. H. S.; GIOMO, G. S.; SALVA, T. J. G. The relationship between organic acids, sucrose and the quality of specialty coffees. African Journal of Agricultural Research, v. 11, p. 709-717, 2016. https://doi.org/10.5897/AJAR2015.10569

 RAMOS, M. F.; RIBEIRO, D. E.; CIRILLO, M. A.; BORÉM, F. M. Discrimination of the sensory quality of the Coffea arabica L. (cv. Yellow Bourbon) produced in different altitudes using decision trees obtained by the CHAID method. Journal of the Science of Food and Agriculture, v. 96, p. n/a-n/a, 2016. https://doi.org/10.1002/jsfa.7539 

SIQUEIRA, V. C.; BORÉM, F. M.; Isquierdo, E.P.; ALVES, G. E.; RIBEIRO, D. E.; PINTO, A. C. F.; TAVEIRA, J. H. S. Drying of hulled naturally processed coffee with high moisture content and its impacts on quality. African Journal of Agricultural Research, v. 11, p. 2903-2911, 2016. https://doi.org/10.5897/AJAR2016.10837 

ALVES, H. M. R.; VIEIRA, T. G. C.; VOLPATO, M. M. L.; LACERDA, M.P. C.; BORÉM, F. M.Geotechnologies for the characterization of specialty coffee environments of mantiqueira de minas in brazil. ISPRS – International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, v. XLI-B8, p. 797-799, 2016. https://doi.org/10.5194/isprs-archives-XLI-B8-797-2016 

SOBREIRA, FABRÍCIO MOREIRA; DE OLIVEIRA, ANTONIO CARLOS BAIÃO; PEREIRA, ANTONIO ALVES; GUARÇONI M., ANDRÉ; SAKIYAMA, NEY SUSSUMU. Divergence among arabica coffee genotypes for sensory quality. Australian Journal of Crop Science, v. 10, p. 1442-1448, 2016. http://dx.doi.org/10.21475/ajcs.2016.10.10.p7430

SCHOLZ, MARIA BRÍGIDA DOS SANTOS; KITZBERGER, CÍNTIA SORANE GOOD; PAGIATTO, NATALIA FERRAREZI; PEREIRA, LUIZ FILIPE PROTASIO; DAVRIEUX, FABRICE; POT, DAVID; CHARMETANT, PIERRE; LEROY, THIERRY. Chemical composition in wild ethiopian arabica coffee accessions. Euphytica, v. 209, p. 429-438, 2016. http://dx.doi.org/10.1007/s1061-016-1653-y 

 ALMEIDA, JULIETA ANDREA SILVA DE; LEAL, R.; CARMAZINI, V. C. B.; SALOMON, M. V.; GUERREIRO-FILHO, OLIVEIRO. Characterization of the morphological events in the direct somatic embryogenesis of Coffea arabica L. genotype leaf explants. Plant Cell Biotechnology and Molecular Biology, v. 17, p. 393-403, 2016.https://ikprress.org/index.php/PCBMB/article/view/1625

ALVES, LEONARDO CARDOSO; MAGALHÃES, DIOGO MACIEL DE; LABATE, MÔNICA TERESA VENEZIANO; GUIDETTI-GONZALEZ, SIMONE; LABATE, CARLOS ALBERTO; DOMINGUES, DOUGLAS SILVA; SERA, TUMORU; VIEIRA, LUIZ GONZAGA ESTEVES; PEREIRA, LUIZ FILIPE PROTASIO. Differentially accumulated proteins in Coffea arabica seeds during perisperm tissue development and their relation to coffee grain size. Journal of Agricultural and Food Chemistry, v. x, p. x-0, 2016. http://dx.doi.org/10.1021/acs.jafc.5b04376